Eliminating reflections in photos?

[davef]

We recently returned from a trip to Switzerland, during which we rode one of the many gorgeous scenic trains, from Zurich to Montreux. Shooting mostly in shutter priority to compensate for the train's motion, with a Nikon D70S and the 18-70 AFS with a circular polarizer on it, some of the shots had reflections from the train's flourescent lights in it, after compensating with the filter for the sun's reflections off the window. I would appreciate suggestions on how to eliminate the reflections. I have Phototoshop Elements 5.0, as well as an older version of Photoshop, 7.0, but truthfully have not had much time to study and learn either one.